PhD student

 

TUM Weihenstephan

Room: OG-L26

Phone: +49(0)8161 71 2144

Email:hoenigschmid[at]wzw.tum.de

Personal data


  • 1985 Born in Dachau
  • 2006 Abitur, Ignaz-Taschner-Gymnasium Dachau
  • 2006-2012 Study of Bioinformatics at the Ludwig-Maximilians-Universität and Technische Universität München
  • 2012 Dipl.-Bioinf. (univ), Thesis: 'Improvement of DNA-­ and RNA-­Protein
    Binding Prediction'

 

Research interests


  • Signal peptides
  • Membrane proteins
  • Machine learning

 

Thesis supervisions


  • Bioinformatics analysis of palmitoylation in membrane proteins
  • Analysis of the membrane protein interactive
  • Analysis of Transmembrane Protein Abundance
  • Analysis and prediction of SNPs in transmembrane proteins
  • Loss of protein secretion in bacterial symbionts and pathogens
  • Evolutionary rate variation among membrane proteins

 

 Publications


  • Hönigschmid P, Frishman D. Accurate prediction of helix interactions and residue contacts in membrane proteins. J Struct Biol. 2016 Apr;194(1) 112-123. doi:10.1016/j.jsb.2016.02.005. PMID: 26851352.
  • Guy Yachdav,Edda Kloppmann,Laszlo Kajan, Maximilian Hecht,Tatyana Goldberg,Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, and Burkhard Rost. PredictProtein—an open resource for online prediction of protein structural and functional features. Nucl. Acids Res. (1 July 2014) 42 (W1): W337-W343 first published online May 5, 2014 doi:10.1093/nar/gku366
  • Dmitry N. Ivankov, Natalya S. Bogatyreva, Peter Hönigschmid, Bastian Dislich, Sebastian Hogl, Peer-Hendrik Kuhn, Dmitrij Frishman and Stefan F. Lichtenthaler: QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis. Nucleic Acid Research 2013, 1-6
  • Dr. Edda Kloppmann, Peter Hoenigschmid, Dr. Burkhard Rost: Protein Secondary Structure Prediction in 2012. Encyclopedia of Biophysics 2013, pp 2040-2047, 10:435-440
  • Tobias Hamp, Rebecca Kassner, Stefan Seemayer, Esmeralda Vicedo, Christian Schaefer, Dominik Achten, Florian Auer, Ariane Boehm, Tatjana Braun, Maximilian Hecht, Mark Heron, Peter Hönigschmid, Thomas A Hopf, Stefanie Kaufmann, Michael Kiening, Denis Krompass, Cedric Landerer, Yannick Mahlich, Manfred Roos and Burkhard Rost: Homology-based inference sets the bar high for protein function prediction. BMC Bioinformatics 2013, 14(Suppl 3):S7
  • Predrag Radivojac,Wyatt T Clark,Tal Ronnen Oron, ..., Peter Hönigschmid, ..., Sean D Mooney & Iddo Friedberg: A large-scale evaluation of computational protein function prediction. Nature Methods 10, 221–227 (2013)